HL_8VPK_009

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AUGUGAUACCGGGUAGGGGUUGU

Length

23 nucleotides

Bulged bases

8VPK|1|A|U|285, 8VPK|1|A|U|288, 8VPK|1|A|G|300, 8VPK|1|A|U|301

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|A|282
8VPK|1|A|U|283
8VPK|1|A|G|284
8VPK|1|A|U|285
8VPK|1|A|G|286
8VPK|1|A|A|287
8VPK|1|A|U|288
8VPK|1|A|A|289
8VPK|1|A|C|290
8VPK|1|A|C|291
8VPK|1|A|G|292
8VPK|1|A|G|293
8VPK|1|A|G|294
8VPK|1|A|U|295
8VPK|1|A|A|296
8VPK|1|A|G|297
8VPK|1|A|G|298
8VPK|1|A|G|299
8VPK|1|A|G|300
8VPK|1|A|U|301
8VPK|1|A|U|302
8VPK|1|A|G|303
8VPK|1|A|U|304

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9