HL_8VPK_011

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

8VPK|1|A|U|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VPK_011 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.2272

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8VPK|1|A|U|387
8VPK|1|A|U|388
8VPK|1|A|G|389
8VPK|1|A|G|390
8VPK|1|A|G|391
8VPK|1|A|A|392
8VPK|1|A|U|393
8VPK|1|A|G|394

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L24