HL_8VPK_030

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8VPK|1|A|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VPK_030 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4037

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VPK|1|A|C|1182
8VPK|1|A|U|1183
8VPK|1|A|U|1184
8VPK|1|A|A|1185
8VPK|1|A|G|1186
8VPK|1|A|A|1187
8VPK|1|A|A|1188
8VPK|1|A|G|1189
8VPK|1|A|C|1190
8VPK|1|A|A|1191
8VPK|1|A|G|1192

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain J

50S ribosomal protein L11