HL_8VPK_037

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

8VPK|1|A|U|1511, 8VPK|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VPK_037 not in the Motif Atlas

Homologous match to HL_9DFE_034

Geometric discrepancy: 0.117

The information below is about HL_9DFE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VPK|1|A|G|1504
8VPK|1|A|U|1505
8VPK|1|A|U|1506
8VPK|1|A|G|1507
8VPK|1|A|A|1508
8VPK|1|A|U|1509
8VPK|1|A|A|1510
8VPK|1|A|U|1511
8VPK|1|A|U|1512
8VPK|1|A|C|1513

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23