HL_8VPK_038
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UCAGUGGUAAUA
- Length
- 12 nucleotides
- Bulged bases
- 8VPK|1|A|A|1673, 8VPK|1|A|G|1674, 8VPK|1|A|U|1675, 8VPK|1|A|U|1681
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VPK_038 not in the Motif Atlas
- Homologous match to HL_7A0S_036
- Geometric discrepancy: 0.5064
- The information below is about HL_7A0S_036
- Detailed Annotation
- Pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- HL_00824.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8VPK|1|A|U|1671
8VPK|1|A|C|1672
8VPK|1|A|A|1673
8VPK|1|A|G|1674
8VPK|1|A|U|1675
8VPK|1|A|G|1676
8VPK|1|A|G|1677
8VPK|1|A|U|1678
8VPK|1|A|A|1679
8VPK|1|A|A|1680
8VPK|1|A|U|1681
8VPK|1|A|A|1682
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L17
Coloring options: