HL_8VPK_039

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUAAAUC

Length

7 nucleotides

Bulged bases

8VPK|1|A|U|1713, 8VPK|1|A|U|1717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VPK_039 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1976

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8VPK|1|A|G|1712
8VPK|1|A|U|1713
8VPK|1|A|A|1714
8VPK|1|A|A|1715
8VPK|1|A|A|1716
8VPK|1|A|U|1717
8VPK|1|A|C|1718

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2