HL_8VPK_042

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

8VPK|1|A|A|1832, 8VPK|1|A|A|1834, 8VPK|1|A|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VPK_042 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.1278

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8VPK|1|A|C|1830
8VPK|1|A|A|1831
8VPK|1|A|A|1832
8VPK|1|A|C|1833
8VPK|1|A|A|1834
8VPK|1|A|C|1835
8VPK|1|A|A|1836
8VPK|1|A|G|1837

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S Ribosomal Protein L22

Chain d

50S ribosomal protein L34