HL_8VPK_050
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUAAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 8VPK|1|A|A|2254, 8VPK|1|A|A|2255, 8VPK|1|A|G|2256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VPK_050 not in the Motif Atlas
- Homologous match to HL_9DFE_048
- Geometric discrepancy: 0.1266
- The information below is about HL_9DFE_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8VPK|1|A|G|2251
8VPK|1|A|U|2252
8VPK|1|A|A|2253
8VPK|1|A|A|2254
8VPK|1|A|A|2255
8VPK|1|A|G|2256
8VPK|1|A|A|2257
8VPK|1|A|U|2258
8VPK|1|A|G|2259
8VPK|1|A|C|2260
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S Ribosomal Protein L37
- Chain D
- 50S ribosomal protein L3
- Chain R
- 50S Ribosomal Protein L20
- Chain b
- 50S ribosomal protein L32
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