HL_8VPK_053

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8VPK|1|A|G|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VPK_053 not in the Motif Atlas

Homologous match to HL_9DFE_051

Geometric discrepancy: 0.0786

The information below is about HL_9DFE_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8VPK|1|A|C|2472
8VPK|1|A|U|2473
8VPK|1|A|G|2474
8VPK|1|A|G|2475
8VPK|1|A|G|2476
8VPK|1|A|G|2477
8VPK|1|A|C|2478
8VPK|1|A|G|2479
8VPK|1|A|G|2480

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain X

50S ribosomal protein L27