HL_8VPK_063

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUAGUACGAGAGGACCG

Length

17 nucleotides

Bulged bases

8VPK|1|A|G|2883, 8VPK|1|A|A|2889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|C|2876
8VPK|1|A|U|2877
8VPK|1|A|A|2878
8VPK|1|A|G|2879
8VPK|1|A|U|2880
8VPK|1|A|A|2881
8VPK|1|A|C|2882
8VPK|1|A|G|2883
8VPK|1|A|A|2884
8VPK|1|A|G|2885
8VPK|1|A|A|2886
8VPK|1|A|G|2887
8VPK|1|A|G|2888
8VPK|1|A|A|2889
8VPK|1|A|C|2890
8VPK|1|A|C|2891
8VPK|1|A|G|2892

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain G

50S ribosomal protein L6