HL_8VR4_009

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUGAUACCGGGUAGGGGUUG

Length

21 nucleotides

Bulged bases

8VR4|1|A|G|286, 8VR4|1|A|U|288, 8VR4|1|A|A|289, 8VR4|1|A|C|290, 8VR4|1|A|C|291, 8VR4|1|A|G|292, 8VR4|1|A|U|301, 8VR4|1|A|U|302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VR4|1|A|U|283
8VR4|1|A|G|284
8VR4|1|A|U|285
8VR4|1|A|G|286
8VR4|1|A|A|287
8VR4|1|A|U|288
8VR4|1|A|A|289
8VR4|1|A|C|290
8VR4|1|A|C|291
8VR4|1|A|G|292
8VR4|1|A|G|293
8VR4|1|A|G|294
8VR4|1|A|U|295
8VR4|1|A|A|296
8VR4|1|A|G|297
8VR4|1|A|G|298
8VR4|1|A|G|299
8VR4|1|A|G|300
8VR4|1|A|U|301
8VR4|1|A|U|302
8VR4|1|A|G|303

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9