HL_8VR4_011

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

8VR4|1|A|U|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VR4_011 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.2248

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8VR4|1|A|U|387
8VR4|1|A|U|388
8VR4|1|A|G|389
8VR4|1|A|G|390
8VR4|1|A|G|391
8VR4|1|A|A|392
8VR4|1|A|U|393
8VR4|1|A|G|394

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L24