HL_8VR4_035

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGAGAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VR4_035 not in the Motif Atlas

Homologous match to HL_9DFE_031

Geometric discrepancy: 0.1076

The information below is about HL_9DFE_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8VR4|1|A|G|1396
8VR4|1|A|U|1397
8VR4|1|A|G|1398
8VR4|1|A|A|1399
8VR4|1|A|G|1400
8VR4|1|A|A|1401
8VR4|1|A|A|1402
8VR4|1|A|C|1403
8VR4|1|A|C|1404

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S Ribosomal Protein L22

Chain b

50S ribosomal protein L32