HL_8VR4_038

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

8VR4|1|A|U|1511, 8VR4|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VR4_038 not in the Motif Atlas

Homologous match to HL_9DFE_034

Geometric discrepancy: 0.1275

The information below is about HL_9DFE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VR4|1|A|G|1504
8VR4|1|A|U|1505
8VR4|1|A|U|1506
8VR4|1|A|G|1507
8VR4|1|A|A|1508
8VR4|1|A|U|1509
8VR4|1|A|A|1510
8VR4|1|A|U|1511
8VR4|1|A|U|1512
8VR4|1|A|C|1513

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23