HL_8VR4_052

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUGGUAACUAUAACCAUC

Length

19 nucleotides

Bulged bases

8VR4|1|A|U|2132, 8VR4|1|A|A|2140, 8VR4|1|A|U|2141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VR4|1|A|G|2130
8VR4|1|A|G|2131
8VR4|1|A|U|2132
8VR4|1|A|G|2133
8VR4|1|A|G|2134
8VR4|1|A|U|2135
8VR4|1|A|A|2136
8VR4|1|A|A|2137
8VR4|1|A|C|2138
8VR4|1|A|U|2139
8VR4|1|A|A|2140
8VR4|1|A|U|2141
8VR4|1|A|A|2142
8VR4|1|A|A|2143
8VR4|1|A|C|2144
8VR4|1|A|C|2145
8VR4|1|A|A|2146
8VR4|1|A|U|2147
8VR4|1|A|C|2148

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX