HL_8VR4_070
3D structure
- PDB id
- 8VR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8VR4|1|A|G|2975, 8VR4|1|A|C|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VR4_070 not in the Motif Atlas
- Homologous match to HL_4WF9_062
- Geometric discrepancy: 0.469
- The information below is about HL_4WF9_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 10
Unit IDs
8VR4|1|A|C|2969
8VR4|1|A|U|2970
8VR4|1|A|G|2971
8VR4|1|A|A|2972
8VR4|1|A|A|2973
8VR4|1|A|A|2974
8VR4|1|A|G|2975
8VR4|1|A|C|2976
8VR4|1|A|A|2977
8VR4|1|A|U|2978
8VR4|1|A|C|2979
8VR4|1|A|U|2980
8VR4|1|A|A|2981
8VR4|1|A|A|2982
8VR4|1|A|G|2983
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L6
- Chain K
- 50S Ribosomal Protein L13
- Chain f
- 50S ribosomal protein L36
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