HL_8VR4_072

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCAGACCAC

Length

9 nucleotides

Bulged bases

8VR4|1|A|C|3041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VR4_072 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.238

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VR4|1|A|G|3040
8VR4|1|A|C|3041
8VR4|1|A|A|3042
8VR4|1|A|G|3043
8VR4|1|A|A|3044
8VR4|1|A|C|3045
8VR4|1|A|C|3046
8VR4|1|A|A|3047
8VR4|1|A|C|3048

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17

Chain b

50S ribosomal protein L32