HL_8VR4_074
3D structure
- PDB id
- 8VR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUCCCAUCCCGAACC
- Length
- 15 nucleotides
- Bulged bases
- 8VR4|1|B|C|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VR4_074 not in the Motif Atlas
- Geometric match to HL_4V9F_074
- Geometric discrepancy: 0.1151
- The information below is about HL_4V9F_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8VR4|1|B|G|35
8VR4|1|B|U|36
8VR4|1|B|C|37
8VR4|1|B|C|38
8VR4|1|B|C|39
8VR4|1|B|A|40
8VR4|1|B|U|41
8VR4|1|B|C|42
8VR4|1|B|C|43
8VR4|1|B|C|44
8VR4|1|B|G|45
8VR4|1|B|A|46
8VR4|1|B|A|47
8VR4|1|B|C|48
8VR4|1|B|C|49
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S Ribosomal Protein L5
- Chain P
- 50S Ribosomal Protein L18
- Chain g
- 50S Ribosomal Protein L31
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