3D structure

PDB id
8VRL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
Experimental method
ELECTRON MICROSCOPY
Resolution
3.33 Å

Loop

Sequence
UUUUGAAGAA
Length
10 nucleotides
Bulged bases
8VRL|1|A|A|666
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VRL_019 not in the Motif Atlas
Homologous match to HL_7A0S_018
Geometric discrepancy: 0.1546
The information below is about HL_7A0S_018
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_33597.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
96

Unit IDs

8VRL|1|A|U|658
8VRL|1|A|U|659
8VRL|1|A|U|660
8VRL|1|A|U|661
8VRL|1|A|G|662
8VRL|1|A|A|663
8VRL|1|A|A|664
8VRL|1|A|G|665
8VRL|1|A|A|666
8VRL|1|A|A|667

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 3
50S Ribosomal Protein L27
Chain D
50S ribosomal protein L3
Chain M
50S ribosomal protein L15
Chain R
Large ribosomal subunit protein bL20
Chain S
Large ribosomal subunit protein bL21
Chain b
50S ribosomal protein L32

Coloring options:


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