HL_8VRL_023

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AAGAGU

Length

6 nucleotides

Bulged bases

8VRL|1|A|A|758, 8VRL|1|A|G|759

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VRL_023 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.2435

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

8VRL|1|A|A|755
8VRL|1|A|A|756
8VRL|1|A|G|757
8VRL|1|A|A|758
8VRL|1|A|G|759
8VRL|1|A|U|760

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L27