HL_8VRL_034

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VRL_034 not in the Motif Atlas

Homologous match to HL_4WF9_031

Geometric discrepancy: 0.1546

The information below is about HL_4WF9_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8VRL|1|A|A|1336
8VRL|1|A|G|1337
8VRL|1|A|U|1338
8VRL|1|A|G|1339
8VRL|1|A|A|1340
8VRL|1|A|U|1341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein bL20

Chain S

Large ribosomal subunit protein bL21