HL_8VRL_038

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

8VRL|1|A|U|1511, 8VRL|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VRL_038 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1686

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VRL|1|A|G|1504
8VRL|1|A|U|1505
8VRL|1|A|U|1506
8VRL|1|A|G|1507
8VRL|1|A|A|1508
8VRL|1|A|U|1509
8VRL|1|A|A|1510
8VRL|1|A|U|1511
8VRL|1|A|U|1512
8VRL|1|A|C|1513

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL23