HL_8VRL_053

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

8VRL|1|A|A|2254, 8VRL|1|A|A|2255, 8VRL|1|A|G|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VRL_053 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.146

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

8VRL|1|A|G|2251
8VRL|1|A|U|2252
8VRL|1|A|A|2253
8VRL|1|A|A|2254
8VRL|1|A|A|2255
8VRL|1|A|G|2256
8VRL|1|A|A|2257
8VRL|1|A|U|2258
8VRL|1|A|G|2259
8VRL|1|A|C|2260

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S Ribosomal Protein L27

Chain D

50S ribosomal protein L3

Chain b

50S ribosomal protein L32