HL_8VRL_073
3D structure
- PDB id
- 8VRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GUCCCAUCCCGAACC
- Length
- 15 nucleotides
- Bulged bases
- 8VRL|1|B|C|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VRL_073 not in the Motif Atlas
- Geometric match to HL_5NS3_003
- Geometric discrepancy: 0.1434
- The information below is about HL_5NS3_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.3
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8VRL|1|B|G|35
8VRL|1|B|U|36
8VRL|1|B|C|37
8VRL|1|B|C|38
8VRL|1|B|C|39
8VRL|1|B|A|40
8VRL|1|B|U|41
8VRL|1|B|C|42
8VRL|1|B|C|43
8VRL|1|B|C|44
8VRL|1|B|G|45
8VRL|1|B|A|46
8VRL|1|B|A|47
8VRL|1|B|C|48
8VRL|1|B|C|49
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- Large ribosomal subunit protein uL18
- Chain g
- 50S Ribosomal Protein L31
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