HL_8VSA_022

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_022 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.2292

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8VSA|1|16S|A|1012
8VSA|1|16S|G|1013
8VSA|1|16S|A|1014
8VSA|1|16S|G|1015
8VSA|1|16S|A|1016
8VSA|1|16S|U|1017

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S14

Small ribosomal subunit protein uS14

Chain S19

30S ribosomal protein S19