HL_8VSA_043

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8VSA|1|23S|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_043 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1472

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VSA|1|23S|G|410
8VSA|1|23S|G|411
8VSA|1|23S|A|412
8VSA|1|23S|C|413
8VSA|1|23S|C|414
8VSA|1|23S|A|415
8VSA|1|23S|U|416
8VSA|1|23S|C|417

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L15

50S ribosomal protein L15