HL_8VSA_052
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGUCGAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 8VSA|1|23S|C|747, 8VSA|1|23S|A|751, 8VSA|1|23S|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VSA_052 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.1152
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8VSA|1|23S|U|744
8VSA|1|23S|G|745
8VSA|1|23S|U|746
8VSA|1|23S|C|747
8VSA|1|23S|G|748
8VSA|1|23S|A|749
8VSA|1|23S|A|750
8VSA|1|23S|A|751
8VSA|1|23S|A|752
8VSA|1|23S|A|753
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L03
- 50S ribosomal protein L3
- Chain L22
- 50S ribosomal protein L22
- Chain L32
- 50S ribosomal protein L32
- Chain L34
- 50S ribosomal protein L34
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