HL_8VSA_055

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

8VSA|1|23S|U|887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_055 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.0828

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8VSA|1|23S|U|884
8VSA|1|23S|C|885
8VSA|1|23S|A|886
8VSA|1|23S|U|887
8VSA|1|23S|C|888
8VSA|1|23S|C|889
8VSA|1|23S|C|890
8VSA|1|23S|G|891
8VSA|1|23S|A|892

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain TMRN

Transfer-messenger RNA; tmRNA