HL_8VSA_065

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8VSA|1|23S|U|1396, 8VSA|1|23S|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_065 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1895

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8VSA|1|23S|G|1389
8VSA|1|23S|U|1390
8VSA|1|23S|U|1391
8VSA|1|23S|A|1392
8VSA|1|23S|A|1393
8VSA|1|23S|U|1394
8VSA|1|23S|A|1395
8VSA|1|23S|U|1396
8VSA|1|23S|U|1397
8VSA|1|23S|C|1398

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L23

50S ribosomal protein L23