HL_8VSA_067

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

8VSA|1|23S|C|1493, 8VSA|1|23S|U|1497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_067 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1752

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8VSA|1|23S|G|1492
8VSA|1|23S|C|1493
8VSA|1|23S|A|1494
8VSA|1|23S|A|1495
8VSA|1|23S|A|1496
8VSA|1|23S|U|1497
8VSA|1|23S|C|1498

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2