HL_8VSA_070

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8VSA|1|23S|A|1614, 8VSA|1|23S|A|1616, 8VSA|1|23S|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_070 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1589

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

8VSA|1|23S|C|1612
8VSA|1|23S|G|1613
8VSA|1|23S|A|1614
8VSA|1|23S|C|1615
8VSA|1|23S|A|1616
8VSA|1|23S|C|1617
8VSA|1|23S|A|1618
8VSA|1|23S|G|1619

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L22

50S ribosomal protein L22

Chain L34

50S ribosomal protein L34