HL_8VSA_098

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

8VSA|1|23S|U|2797, 8VSA|1|23S|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_098 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.535

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8VSA|1|23S|C|2795
8VSA|1|23S|U|2796
8VSA|1|23S|U|2797
8VSA|1|23S|U|2798
8VSA|1|23S|A|2799
8VSA|1|23S|A|2800
8VSA|1|23S|G|2801

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains