HL_8VSA_104

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUUGCACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_104 not in the Motif Atlas

Homologous match to HL_4YCO_002

Geometric discrepancy: 0.1759

The information below is about HL_4YCO_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

8VSA|1|ATRN|C|31
8VSA|1|ATRN|U|32
8VSA|1|ATRN|U|33
8VSA|1|ATRN|U|34
8VSA|1|ATRN|G|35
8VSA|1|ATRN|C|36
8VSA|1|ATRN|A|37
8VSA|1|ATRN|C|38
8VSA|1|ATRN|G|39

Current chains

Chain ATRN

A-tRNA

Nearby chains

Chain 16S

Small subunit ribosomal RNA; SSU rRNA

Chain 23S

Large subunit ribosomal RNA; LSU rRNA

Chain S12

30S ribosomal protein S12

Chain TMRN

Transfer-messenger RNA; tmRNA