HL_8VSA_107

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGCUUAAUAACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VSA|1|TMRN|A|116
8VSA|1|TMRN|G|117
8VSA|1|TMRN|C|118
8VSA|1|TMRN|U|119
8VSA|1|TMRN|U|120
8VSA|1|TMRN|A|121
8VSA|1|TMRN|A|122
8VSA|1|TMRN|U|123
8VSA|1|TMRN|A|124
8VSA|1|TMRN|A|125
8VSA|1|TMRN|C|126
8VSA|1|TMRN|C|127
8VSA|1|TMRN|U|128

Current chains

Chain TMRN

TMRN

Nearby chains

Chain 16S

Small subunit ribosomal RNA; SSU rRNA

Chain S02

30S ribosomal protein S2

Chain S03

30S ribosomal protein S3

Chain S05

30S ribosomal protein S5