3D structure

PDB id
8VSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GCGUGUCCGUCCGC
Length
14 nucleotides
Bulged bases
8VSA|1|TMRN|U|262
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8VSA|1|TMRN|G|259
8VSA|1|TMRN|C|260
8VSA|1|TMRN|G|261
8VSA|1|TMRN|U|262
8VSA|1|TMRN|G|263
8VSA|1|TMRN|U|264
8VSA|1|TMRN|C|265
8VSA|1|TMRN|C|266
8VSA|1|TMRN|G|267
8VSA|1|TMRN|U|268
8VSA|1|TMRN|C|269
8VSA|1|TMRN|C|270
8VSA|1|TMRN|G|271
8VSA|1|TMRN|C|272

Current chains

Chain TMRN
TMRN

Nearby chains

Chain S19
30S ribosomal protein S19

Coloring options:

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