HL_8VT5_001

3D structure

PDB id

8VT5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of human menRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.69 Å

Loop

Sequence

GGGGC*C

Length

6 nucleotides

Bulged bases

8VT5|1|A|G|14, 8VT5|1|A|G|15

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VT5_001 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1566

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8VT5|1|A|G|11
8VT5|1|A|G|12
8VT5|1|A|G|14
8VT5|1|A|G|15
8VT5|1|A|C|16
*
8VT5|1|A|C|16

Current chains

Chain A

menRNA

Nearby chains