HL_8VT5_003

3D structure

PDB id

8VT5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of human menRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.69 Å

Loop

Sequence

GUUCGAGUC

Length

9 nucleotides

Bulged bases

8VT5|1|A|G|46, 8VT5|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8VT5|1|A|G|40
8VT5|1|A|U|41
8VT5|1|A|U|42
8VT5|1|A|C|43
8VT5|1|A|G|44
8VT5|1|A|A|45
8VT5|1|A|G|46
8VT5|1|A|U|47
8VT5|1|A|C|48

Current chains

Chain A

menRNA

Nearby chains