HL_8VTU_049

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8VTU|1|1A|A|2030, 8VTU|1|1A|A|2031, 8VTU|1|1A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTU_049 not in the Motif Atlas

Homologous match to HL_8VTW_049

Geometric discrepancy: 0.0318

The information below is about HL_8VTW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8VTU|1|1A|G|2027
8VTU|1|1A|U|2028
8VTU|1|1A|G|2029
8VTU|1|1A|A|2030
8VTU|1|1A|A|2031
8VTU|1|1A|G|2032
8VTU|1|1A|A|2033
8VTU|1|1A|U|2034
8VTU|1|1A|G|2035
8VTU|1|1A|C|2036

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1U

50S ribosomal protein L20