HL_8VTU_057

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTU_057 not in the Motif Atlas

Homologous match to HL_8VTW_057

Geometric discrepancy: 0.044

The information below is about HL_8VTW_057

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8VTU|1|1A|C|2374
8VTU|1|1A|G|2375
8VTU|1|1A|A|2376
8VTU|1|1A|A|2377
8VTU|1|1A|A|2378
8VTU|1|1A|G|2379

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L33

Chain 1S

50S ribosomal protein L18