HL_8VTU_096

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

8VTU|1|1a|U|1136, 8VTU|1|1a|C|1137, 8VTU|1|1a|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTU_096 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.2277

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTU|1|1a|G|1134
8VTU|1|1a|U|1135
8VTU|1|1a|U|1136
8VTU|1|1a|C|1137
8VTU|1|1a|G|1138
8VTU|1|1a|G|1139
8VTU|1|1a|C|1140

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains