HL_8VTV_032
3D structure
- PDB id
- 8VTV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VTV_032 not in the Motif Atlas
- Homologous match to HL_8VTW_032
- Geometric discrepancy: 0.0434
- The information below is about HL_8VTW_032
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8VTV|1|1A|G|1281
8VTV|1|1A|U|1282
8VTV|1|1A|G|1283
8VTV|1|1A|A|1284
8VTV|1|1A|G|1285
8VTV|1|1A|A|1286
8VTV|1|1A|A|1287
8VTV|1|1A|U|1288
8VTV|1|1A|C|1289
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1R
- 50S ribosomal protein L17
- Chain 1W
- 50S ribosomal protein L22
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