HL_8VTV_050

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

8VTV|1|1A|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTV_050 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.3581

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8VTV|1|1A|C|2143
8VTV|1|1A|U|2144
8VTV|1|1A|C|2145
8VTV|1|1A|C|2146
8VTV|1|1A|G|2147
8VTV|1|1A|G|2148

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1k

30S ribosomal protein S11