HL_8VTV_124

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

8VTV|1|2A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTV_124 not in the Motif Atlas

Homologous match to HL_8VTW_012

Geometric discrepancy: 0.0593

The information below is about HL_8VTW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.6

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8VTV|1|2A|G|382
8VTV|1|2A|U|383
8VTV|1|2A|U|384
8VTV|1|2A|C|385
8VTV|1|2A|G|386
8VTV|1|2A|U|387
8VTV|1|2A|G|388
8VTV|1|2A|G|389
8VTV|1|2A|A|390
8VTV|1|2A|G|391
8VTV|1|2A|C|392

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15