HL_8VTV_138

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

8VTV|1|2A|U|958, 8VTV|1|2A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTV_138 not in the Motif Atlas

Homologous match to HL_8VTW_026

Geometric discrepancy: 0.0726

The information below is about HL_8VTW_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8VTV|1|2A|C|955
8VTV|1|2A|G|956
8VTV|1|2A|A|957
8VTV|1|2A|U|958
8VTV|1|2A|A|959
8VTV|1|2A|A|960
8VTV|1|2A|C|961
8VTV|1|2A|G|962

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2Q

50S ribosomal protein L16

Chain 2x

Transfer RNA; tRNA