HL_8VTV_139

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTV_139 not in the Motif Atlas

Homologous match to HL_8VTW_027

Geometric discrepancy: 0.0737

The information below is about HL_8VTW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VTV|1|2A|G|978
8VTV|1|2A|G|979
8VTV|1|2A|A|980
8VTV|1|2A|A|981
8VTV|1|2A|C|982
8VTV|1|2A|A|983
8VTV|1|2A|A|984
8VTV|1|2A|C|985

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2U

50S ribosomal protein L20