HL_8VTV_145

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8VTV|1|2A|U|1396, 8VTV|1|2A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTV_145 not in the Motif Atlas

Homologous match to HL_8VTW_035

Geometric discrepancy: 0.0596

The information below is about HL_8VTW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VTV|1|2A|G|1389
8VTV|1|2A|U|1390
8VTV|1|2A|U|1391
8VTV|1|2A|A|1392
8VTV|1|2A|A|1393
8VTV|1|2A|U|1394
8VTV|1|2A|A|1395
8VTV|1|2A|U|1396
8VTV|1|2A|U|1397
8VTV|1|2A|C|1398

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23