HL_8VTV_160

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8VTV|1|2A|A|2030, 8VTV|1|2A|A|2031, 8VTV|1|2A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTV_160 not in the Motif Atlas

Homologous match to HL_8VTW_049

Geometric discrepancy: 0.068

The information below is about HL_8VTW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8VTV|1|2A|G|2027
8VTV|1|2A|U|2028
8VTV|1|2A|G|2029
8VTV|1|2A|A|2030
8VTV|1|2A|A|2031
8VTV|1|2A|G|2032
8VTV|1|2A|A|2033
8VTV|1|2A|U|2034
8VTV|1|2A|G|2035
8VTV|1|2A|C|2036

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3