HL_8VTW_011

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

8VTW|1|1A|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08002.10

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

8VTW|1|1A|G|327
8VTW|1|1A|U|328
8VTW|1|1A|G|329
8VTW|1|1A|A|330
8VTW|1|1A|A|331
8VTW|1|1A|A|332
8VTW|1|1A|G|333
8VTW|1|1A|C|334
8VTW|1|1A|C|335

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24