HL_8VTW_065

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases (A, C, G, U)

2751G, 2755C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.8

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8VTW|1|1A|C|2745
8VTW|1|1A|U|2746
8VTW|1|1A|G|2747
8VTW|1|1A|A|2748
8VTW|1|1A|A|2749
8VTW|1|1A|A|2750
8VTW|1|1A|G|2751
8VTW|1|1A|C|2752
8VTW|1|1A|A|2753
8VTW|1|1A|U|2754
8VTW|1|1A|C|2755
8VTW|1|1A|U|2756
8VTW|1|1A|A|2757
8VTW|1|1A|A|2758
8VTW|1|1A|G|2759

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13