HL_8VTW_161

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

8VTW|1|2A|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTW_161 not in the Motif Atlas

Homologous match to HL_8VTW_058

Geometric discrepancy: 0.0483

The information below is about HL_8VTW_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14199.2

Basepair signature

cWW-tHS-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8VTW|1|2A|C|2404
8VTW|1|2A|G|2405
8VTW|1|2A|U|2406
8VTW|1|2A|G|2407
8VTW|1|2A|U|2408
8VTW|1|2A|G|2409
8VTW|1|2A|G|2410
8VTW|1|2A|A|2411
8VTW|1|2A|A|2412
8VTW|1|2A|G|2413

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15